This seminar focuses on the increasing importance of Artificial Intelligence (AI) in academic research and writing, providing practical insights into AI technologies; use in these areas.The workshop explores ChatGPT and prompt engineering, as well as other academic AI tools to aid research and writing, examining both benefits and challenges. Ethical aspects, such as copyright and authenticity of research results, are discussed, with the goal of equipping participants with practical knowledge and skills to effectively utilize AI in daily research through interactive elements like case studies and group discussions.

The course is practical and aims at teaching students how to:

• Use the programming environment R and RStudio, which includes installation, how to handle errors, problem solve and access helper documents.
• Use basic concepts of programming, such as data types, logical and arithmetic operators, if else conditions, loops and functions.
• Use common R packages to perform basic statistical analysis (e.g., t-test, chi2-test, correlation) and visual presentation (e.g., boxplot, histogram and heat-map) of data in R.

The course is structured with the intent to gradually make students more autonomous in writing code. Starting by introducing a concept through a lecture, then providing formative quizzes and tasks relateed to the concept. This all leads up to a project (exam) where the student gets to combine multiple concepts into a project with the intent of solving a certain problem or displaying specific statistical tests of visual components. 

Do you need to turn data into a publication figure? We offer tools and confidence for the student to independently select a statistical method for research questions in their field. The course is practical and includes implementing a basic statistical analysis in R, the leading statistical programming language in bioinformatics and medical science. Furthermore, we give a brief introduction to visualization in R, with a focus on R/ggplot2. Students can bring data from their own research project, or work on data from the course.

The course content lean on Design thinking ideology and methodology that inform research as well as developmental work and form a practice-based foundation for innovation aimed to meet the needs of societal and scientific environments. As a student, you work  individually from your own research perspective, and get helpful insights for future research.  

The course apply a problem-oriented teaching and learning style,  with a pedagogy that enables students to take active responsibility for individual and also group learning in a multi-disciplinary context.

Progress in medical innovation stands as a catalyst for worldwide economic growth. Whether within pharmaceuticals, medical devices, biotechnology, information technology, or a fusion of these advancements, the potential advantages extend significantly to private businesses and societal well-being. However, due to long development times and rigorous regulations, these innovative concepts require a lot of financing to establish their presence in the market. Consequently, assessing the value of novel medical innovations remains crucial. The primary objective of this course is to empower researchers with the proficient capability to effectively assess the worth of emerging technologies or processes within the medical industry.

The course aim is that the doctoral student develops a theory of science approach by enabling the doctoral student to understand, employ, reflect upon and critically assess concepts and ideas of theories of science as well as their implications for in particular medical scientific practice. A further aim is to enable the doctoral student to understand, reflect upon and critically assess views on and implications of definitions of health and disease.

Dive into the cutting-edge world of nuclear medicine with this comprehensive course that blends theory and hands-on practice. In this one-week course, you will gain invaluable knowledge and skills at the forefront of medical imaging and targeted radiopharmaceutical therapies.

This course offers a unique opportunity to:

• Master the fundamentals of radiation physics and biology
• Explore state-of-the-art diagnostic and therapeutic applications in oncology and neurology
• Gain practical experience handling radiopharmaceuticals in a laboratory setting
• Understand the latest developments in personalised medicine using radioactive tracers

Upon completing the course, you will be allowed to handle radiopharmaceuticals and open radioactive sources at Karolinska Institute and Karolinska University Hospital.

The course will introduce neuropsychological assessment in an aging population, focusing on age-related cognitive changes and their neural correlates. An additional purpose is to increase understanding of cognitive aging and how to differentiate between non-pathological cognitive aging and early signs of pathology. After the course, you will be able to define and describe common neuropsychological concepts and measurement techniques and demonstrate an overall understanding of neuropsychological investigation methodology and cognitive diagnostics in aging. The course will give you an increased understanding of cognitive aging and the complexity of differentiating between “normal” and early-stage pathological aging.

This course will provide curious students with an overview of the field of nervous system injury and possibilities for repair. We will focus on the cellular pathobiology but have a translational outlook and integrate the clinical perspective. The student will after the course know the basic concepts and recognise relevant research questions in the field. Hence, the student have aquired up to date information and understanding of the problems and possibilities for repairing an injured central or peripheral nervous system. 

The course is aimed for you who want to get an understanding of the principles of PET, the methodology used for neuroreceptor imaging and quantification, as well as to get an insight in important research ongoing in the field and in the clinical applications of PET.

This course has the main general purpose of connecting two topics, or disease types, which are generally known by the scientific community to be completely distant from each other, such as Infections of the Central Nervous System (Neuro-Infections) and neurodegenerative diseases/dementia.  

Students should gain knowledge on the common neuroinflammatory processes and molecular mechanisms of neuronal damage that are common between neurodegenerative diseases and Central Nervous System infections. These learning outcomes reflect the purpose of the course, which is of shedding light into the interplay between dementia/neurodegenerative disease and infections and try to understand the molecular biology that connects these two types of brain disease. 

The purpose of the course is to give doctoral students a broad knowledge of Alzheimer's disease, covering cellular
mechanisms as well as clinical features and diagnosis. Experts in the field are invited to give the lectures securing
communication of up-to-date knowledge about the disease. Students will also get the opportunity to obtain deeper
knowledge on specific sub-topics during the planned group assignments. The second part will provide pratical
knowledge about brain development, brain anatomy and connectivty and AD and dementia neuropathologies.

Topics covered include:

• Basics of monolayer glioblastoma cell culturing
• Generation and culturing of human glioblastoma organoids
• Immunochemistry, Western Blot, DNA/RNA isolation
• Flow cytometry analysis of cell death and cell viability assays
• Live-cell imaging and morphology analysis
• Data analysis including statistics using ImageJ, FlowJo, GraphPad PRISM
• Visualization of results using Microsoft Excel/Powerpoint or Adobe illustrator

Topics coverd include:

• Vascular Biology and organotypic properties
• How to investigate blood vessels in the CNS
• Isolation of blood vessels and endothelial cells from the mouse CNS
• Endothelial cell tube formation assay
• Co-culture of endothelial cells and pericytes in 3D
• In vitro blood brain barrier assay

Topics covered include:

• Coding: theory, practical training, coding styles, unit testing
• Collaborative software development workflows
• Data analytics workflows
• (Generalised) linear mixed effects models
• Bayesian statistics
• Data visualisation
• Workflow automation
• Meta-science

Topics covered include:

• Deep brain imaging using single- and two-photon imaging techniques
• Miniature microscope recordings in freely moving animals
• Combined all-optical imaging and optogenetic tools
• Large scale neural population analysis using data science and machine learning techniques
• Behavioural phenotyping using markerless pose estimation
• Scientific programming using Python

Topics covered include:

• Cellular resolution fluorescent in vivo imaging (mouse model)
• Histological analysis of post-encephalitic brain tissue changes
• Field electrophysiology (in vivo, in vitro)
• Patch-clamp cellular recordings (in vitro)
• Targeted light-based circuit interference, light-activated antiepileptic drugs

This module is dedicated to understanding and investigating how small molecular modulators can be used to specifically target prominent metabolic pathways using the mouse as an experimental animal model. Attendees will be introduced to murine animal handling, murine primary adipocyte isolation and in vivo, ex vivo and in vitro pharmacological experimentation with the model system. The practical work will be supported by institute seminars covering, among other, signal transduction metabolism and pharmacology.

The lab-based practical part of the course will cover methods used to tackle questions in the research area outlined above, such as cell culture, microscopy, tissue dissociation and processing of tissue samples, MACS and FACS-based cell analysis and separation, cell transfection, cell genome engineering, transgene expression, cellular
assays, protein and gene expression analyses etc. In addition to the practical part, students will attend lectures and seminars.

Topics covered include:

• Basic protein-biochemical methods (protein-protein interactions, Western Blotting
• Processing of human samples for protein detection
• Basic cloning techniques and CRISPR
• Cell culture work with primary cells and cell lines

Topics covered include:

• Diversity of neuronal cell types and approaches to cell type classification
• Experimental design to dissect the functional contribution of diverse neuronal cell types to behaviour
• Stereotaxic surgeries and cell type-specific targeting with viral vectors in transgenic mice
• Deep-brain imaging at the single-cell level using miniature microscopes in freely-moving mice and 2-photon recordings in head-fixed animals
• All-optical interrogation of neural circuits with combined imaging and optogenetic approaches
• Introduction to analysis of deep-brain imaging data

Topics include:

• Free swimming and restrained behavioural recording
• Multiphoton neuronal population imaging
• 3D electron microscopy preparation and collection
• Time series analysis and machine learning-based image segmentation

Topics covered include:

• Handling of adult and larvae zebrafish. Manual Morpholino® (MO) injections into fertilized fish eggs
• Fluorescent in vivo microscopy of transgenic larvae zebrafish
• Different screenings (behavior/development/expression)
• Documentation and analysis of treated fish larvae (≤ 5 dpf) and their controls

This course covers structural analysis of the hypothalamic visual relay system across actinoptrygian fishes.